Identification of western North Atlantic odontocete echolocation click types using machine learning and spatiotemporal correlates. Cohen, R.E., K.E.Frasier, S. Baumann-Pickering, S.M. Wiggins, M.A. Rafter, L.M. Baggett, and J.A. Hildebrand. PLOS One. 2022. 17(3): e0264988
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Date Published:
  • March 24, 2022

A combination of machine learning and expert analyst review was used to detect odontocete echolocation clicks, identify dominant click types, and classify clicks in 32 years of acoustic data collected at 11 autonomous monitoring sites in the western North Atlantic between 2016 and 2019. Previously-described click types for eight known odontocete species or genera were identified in this data set: Blainville’s beaked whales (Mesoplodon densirostris), Cuvier’s beaked whales (Ziphius cavirostris), Gervais’ beaked whales (Mesoplodon europaeus), Sowerby’s beaked whales (Mesoplodon bidens), and True’s beaked whales (Mesoplodon mirus), Kogia spp., Risso’s dolphin (Grampus griseus), and sperm whales (Physeter macrocephalus)

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Date Published:
  • November 1, 2019

This project is intended to provide baseline information on the species composition, density, distribution, and basic behavior of marine mammals and sea turtles present within the United States (U.S.) Navy’s Virginia Capes (VACAPES) Operating Area (OPAREA). This study is part of a larger, multi-institutional, marine mammal and sea turtle monitoring program of U.S. Navy range complexes along the U.S. Atlantic Coast and Gulf of Mexico supporting Atlantic Fleet Training and Testing (AFTT)

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  • 4,083.79 KB
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Habitat utilization by beaked whales in the western North Atlantic Ocean using passive acoustics. DeAngelis AI, Westell A, Baumann-Pickering S, Bell J and others. Marine Ecology Progress. 2025. 754:137-153
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Date Published:
  • April 1, 2020

Taking into consideration the multiple intermediate scientific objectives in the U.S. Navy’s Strategic Planning Process (DoN 2013b), the goals of this study are to assist the U.S. Navy and regulatory agencies with environmental planning and compliance by addressing the following questions:  Which cetacean species occur over the outer continental shelf to the east of NSN, and how does occurrence fluctuate seasonally?  What are the baseline behaviors and ecological relationships of offshore cetaceans within the study area?  Do individual cetaceans exhibit site fidelity within specific regions of the study area over periods of weeks, months, or years?  What is the seasonal extent of cetacean movements within and around U.S. Navy VACAPES training range boxes?  Do cetaceans spend significant time within or primarily

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  • 9,368.29 KB
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Date Published:
  • May 1, 2021

Taking into consideration the multiple intermediate scientific objectives in the U.S. Navy’s Strategic Planning Process (DoN 2013b), the goals of this study are to assist the U.S. Navy and regulatory agencies with environmental planning and compliance by addressing the following questions:  Which cetacean species occur over the outer continental shelf to the east of NSN, and how does occurrence fluctuate seasonally?  What are the baseline behaviors and ecological relationships of offshore cetaceans within the study area?  Do individual cetaceans exhibit site fidelity within specific regions of the study area over periods of weeks, months, or years?  What is the seasonal extent of cetacean movements within and around U.S. Navy VACAPES training range boxes?  Do cetaceans spend significant time within or primarily

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  • 3,862.99 KB
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Date Published:
  • March 1, 2016

This report details part of a multi-institutional monitoring project intended to provide information 3 on the species composition, population identity, density, and baseline behavior of marine 4 mammals and sea turtles present in United States (U.S.) Navy range complexes along the U.S. 5 Atlantic Coast.

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  • 7,438.82 KB
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Species diversity and abundance at a cetacean "hot spot" off Cape Hatteras, North Carolina, USA. McAlarney, R., E. Cummings, C. Paxton, D.A. Pabst, A. Read, J. Bell, and W. McLellan. 21st Biennial Conference on the Biology of Marine Mammals .
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Date Published:
  • December 13, 2015

We have been conducting ongoing monthly aerial surveys off Cape Hatteras, NC, USA as part of the US Navy's marine species monitoring program in the Atlantic since 2011. We utilize line transect survey methods and extensively photograph all sightings to confirm species identification. Survey tracklines extend from shallow continental shelf waters, across the shelf break, to deep pelagic waters. From May 2011 through December 2014, 26,131km of trackline were flown, and 9,941 individual cetaceans were documented during 437 encounters. Nineteen species of cetaceans, including three mysticetes (Balaenoptera physalus, B. acutorostrata, Megaptera novaeangliae), five deep-divers (Physeter microcephalus, Kogia spp., Ziphius cavirostris, Mesoplodon europaeus, M. mirus), and eleven delphinids (Tursiops truncatus, Stenella frontalis, S. attenuate, S. coeruleoalba, S. clymene, S. longirostris, Steno bredanensis, Peponocephala electra, Lagenodelphis hosei, Grampus griseus and Globicephala macrorhynchus) were encountered. Similar surveys at the adjacent Onslow Bay, NC site yielded only 257 sightings (4,773 individuals representing nine species) despite nearly two times the survey effort flown (48,698km). At Cape Hatteras, minimum abundance estimates (i.e. uncorrected for availability or perception bias) were generated using spatio-temporal density surface modelling for species with sufficient detections. Predicted monthly abundance of T. truncatus varied between 170 (95% confidence interval; 0 - 17,100) and 3,450 (300 - 8,510). Monthly Stenella spp. abundance varied between 110 (0 - 360) and 1,720 (400 - 5,390). Monthly abundance of G. macrorhynchus varied between 10 (0 - 960) and 1,230 (220 - 4,300). These results demonstrate that the waters off Cape Hatteras support both higher diversity and density of cetaceans than adjacent waters along the US Atlantic coast. This site is included in the area of interest identified in six pending permits for large-scale, commercial seismic surveys. We suggest that the high density and diversity of cetaceans at this site warrants a special degree of concern by the US Bureau of Ocean Energy Management.

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  • 92.54 KB
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Year-round presence of beaked whales off Cape Hatteras North Carolina. McLellan, W., R. McAlarney, E. Cummings, J. Bell, A. Read, and D.A. Pabst. 21st Biennial Conference on the Biology of Marine Mammals .
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Date Published:
  • December 13, 2015

We conducted monthly aerial surveys off Cape Hatteras, NC, USA as part of an ongoing monitoring project of sites utilized by the US Navy for training and testing activities along the US Atlantic coast. Survey tracklines extend from shallow continental shelf waters, across the continental shelf break, to deep pelagic waters. During surveys we record the geographic position of each marine mammal sighting, take extensive photographs of each animal, and review these images in the lab to confirm species identification. Characteristics utilized to identify beaked whales to species are based upon our sightings of adult males with erupted teeth and from comparisons with images of stranded animals. Between May 2011 and December 2014, we recorded 63 beaked whale sightings, representing 173 individuals. Beaked whales were observed in every month of the year, with the highest number of sightings (n=42) from May through August. The most commonly encountered species, observed in every month of the year, was Ziphius cavirostris (n=36 sightings, 106 individuals). Mesoplodon spp. (n=27 sightings, 67 individuals) were encountered in all months except September and October. Five of these mesoplodont sightings could be identified to species with M. europaeus (n=4 sightings, 12 individuals) and M. mirus (n=1 sighting, 2 individuals) identified from May through July. All beaked whales were encountered along the continental shelf break suggesting a restricted distribution. This area has recently been opened by the US Bureau of Ocean Energy Management to offshore oil and gas exploration. The geographic distribution of beaked whales off Cape Hatteras overlaps the "Manteo Prospect" and is included in the areas of interest identified in six pending permits for large-scale, commercial seismic surveys. The cumulative impacts of seismic surveys are of special concern as deep-diving beaked whales have been shown to be vulnerable to high-amplitude, impulsive anthropogenic sounds.

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  • 91.92 KB
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Distribution and abundance of beaked whales (Family Ziphiidae) off Cape Hatteras, North Carolina, U.S.A. McLellan, W.A., R.J. McAlarney, E.W. Cummings, A.J. Read, C.G.M. Paxton, J.T. Bell, and D.A. Pabst.. Marine Mammal Science. 2018. 34:997-1017
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Date Published:
  • March 30, 2018

Beaked whales are vulnerable to the impacts of disturbance from several sources of anthropogenic sound. Here we report the distribution and abundance of beaked whales off Cape Hatteras, North Carolina, U.S.A., an area utilized by the U.S. Navy for training exercises, and of particular interest for seismic geophysical surveys. From May 2011 through November 2015, monthly aerial surveys were conducted at the site. Beaked whales were encountered 74 times (n = 205 individuals) during these surveys. Ziphius cavirostris, the most commonly encountered species, was observed in every month of the year. Mesoplodon spp. were encountered in ten months of the year. Photographs of adult males with erupted teeth permitted six sightings to be identified conclusively as M. europaeus; M. mirus was also photographed just outside the study area. Beaked whale surface densities stratified by depth (0.005–0.007/km2) were among the highest reported in the world for small ziphiids. A quantitative comparison of sightings and stranding records suggests that strandings do not accurately reflect the relative abundance of beaked whale species in this area. We conclude that Cape Hatteras, at the convergence of the Labrador Current and Gulf Stream, is a particularly important year-round habitat for several species of beaked whales.

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Year-round presence of beaked whales off Cape Hatteras North Carolina. McLellan, W.A., R.J. McAlarney, E.W. Cummings, J. Bell, A.J. Read, and D.A. Pabst.. SEAMAMMS (Southeast and Mid-Atlantic Marine Mammal Symposium) .
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Date Published:
  • April 1, 2016

We conducted monthly aerial surveys off Cape Hatteras, NC, USA as part of an ongoing monitoring project of sites utilized by the US Navy for training and testing activities along the US Atlantic coast. Survey tracklines extend from shallow continental shelf waters, across the continental shelf break, to deep pelagic waters. During surveys we record the geographic position of each marine mammal sighting, take extensive photographs of each animal, and review these images in the lab to confirm species identification. Characteristics utilized to identify beaked whales to species are based upon our sightings of adult males with erupted teeth and from comparisons with images of stranded animals we have confirmed species ID.

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  • 205.10 KB
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Passive Acoustic Monitoring for Marine Mammals and Ambient Noise off Jacksonville. Posdaljian, N., Schoenbeck, C.M., DeAngelis, A.I., Baggett, L.M., Davis, G., Transue, L., & Frasier, K.E.
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Date Published:
  • May 21, 2026

The U.S. Navy’s Jacksonville Range Complex (JAX) is located in the South Atlantic Bight offshore northeastern Florida and southeastern Georgia. From 2009 to 2020, passive acoustic monitoring was conducted using High-frequency Acoustic Recording Packages (HARPs) deployed across a depth gradient spanning the continental shelf and slope. Three sites were located on the shallow shelf (A–C; approximately 40–90 m), and one site was located on the continental slope (D; approximately 730–800 m). These long-term acoustic data provide a comprehensive assessment of marine mammal occurrence and ambient sound conditions across the region.

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  • 4,704.70 KB
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Passive Acoustic Monitoring for Marine Mammals and Ambient Noise Near Onslow Bay. Posdaljian, N., Schoenbeck, C.M., DeAngelis, A.I., Baggett, L.M., Davis, G., Transue, L., & Frasier, K.E.
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Date Published:
  • May 20, 2026

From 2007 to2013,acomprehensive acoustic monitoring effort was conducted within the boundaries of the Onslow Bay study area to study marine mammal presence and ambient noise levels. The objective was to characterize the vocalizations of marine mammal species in the area, identify their seasonal presence patterns, and assess the potential impacts of naval operations on these species. This report presents the findings from the analysis of data collected using High-frequency Acoustic Recording Packages (HARPs; (Wiggins & Hildebrand 2007)), which were strategically deployed within the Onslow Bay study area across a shelf-to-slope gradient.

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  • 4,896.89 KB
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Passive Acoustic Monitoring for Marine Mammals and Ambient Noise Near Norfolk Canyon. Posdaljian, N., Schoenbeck, C.M., DeAngelis, A.I., Baggett, L.M., Davis, G., Transue, L., Williamson, C., Forsberg, L., Cuatrecasas, R., & Frasier, K.E.
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Date Published:
  • May 20, 2026

From 2014 to2021, a comprehensive acoustic monitoring effort was conducted within the boundaries of the Virginia Capes Range Complex to study marine mammal presence and ambient noise levels. The objective was to characterize the vocalizations of marine mammal species in the area, identify their seasonal presence patterns, and assess the potential impacts of naval operations on these species. This report presents the findings from the analysis of data collected using six High-frequency Acoustic Recording Packages (HARPs; Wiggins & Hildebrand 2007), which were strategically deployed within the Virginia Capes Range Complex near Norfolk Canyon (Figure 1 & Table 1).

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  • 4,651.75 KB
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Passive Acoustic Monitoring for Marine Mammals and Ambient Noise Offshore Cape Hatteras. Posdaljian, N., Schoenbeck, C.M., DeAngelis, A.I., Baggett, L.M., Davis, G., Transue, L., Williamson, C., Forsberg, L., Cuatrecasas, R., & Frasier, K.E.
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Date Published:
  • May 20, 2026

From 2012 to 2020, a comprehensive acoustic monitoring effort was conducted within the boundaries of the Virginia Capes Range Complex to study marine mammal presence and ambient noise levels. The objective was to characterize the vocalizations of marine mammal species in the area, identify their seasonal presence patterns, and assess the potential impacts of naval operations on these species. This report presents the findings from the analysis of data collected using 12 High-frequency Acoustic Recording Packages (HARPs; Wiggins & Hildebrand 2007), which were strategically deployed offshore from Cape Hatteras within the southern portion of the Virginia Capes Range Complex (Figure 1 & Table 1).

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  • 5,094.49 KB
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Date Published:
  • January 1, 2025

Long-term high-frequency acoustic recording packages (HARPs) at eight sites along the western North Atlantic shelf break.

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  • 1,276.05 KB
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Date Published:
  • January 27, 2022

Over 25 species of cetaceans utilize the shelf break regions of the US eastern seaboard, including several endangered species. Understanding patterns in species distribution, and the anthropogenic and environmental drivers that may impact their distribution, are critical for appropriate management of marine habitats. To better understand patterns in species distribution and vocal activity, NOAA’s Northeast Fisheries Science Center and Scripps Institution of Oceanography (SIO) collaboratively deployed long-term high-frequency acoustic recording packages (HARPs) at eight sites along the western North Atlantic shelf break. This work was conducted from 2015-2019, in coordination with the Bureau of Ocean Energy Management (BOEM). Likewise, the US Navy has been monitoring the shelf break region at 3 to 4 sites since 2007. Together these combined efforts bring the total to 11 recording sites spanning the U.S. eastern seaboard, from New England to Georgia.

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  • 3,732.50 KB
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Date Published:
  • January 1, 2024

To better understand patterns in species distribution and vocal activity, NOAA’s Northeast Fisheries Science Center (NEFSC) and Scripps Institution of Oceanography (SIO) collaboratively deployed long-term high-frequency acoustic recording packages (HARPs) at eight sites along the western North Atlantic shelf break. This work was conducted from 2015-2019, with financial support from the Bureau of Ocean Energy Management (BOEM). Likewise, the U.S. Navy has been monitoring the shelf break region at 3 to 4 sites since 2007. Together these combined efforts bring the total to 11 recording sites spanning the U.S. eastern seaboard, from New England to Florida. The work this year was aimed at finalizing components for these key objectives: I. Submit a manuscript describing the methodology of the beaked whale neural net classifier to be cited in future publications utilizing this approach II. Submit a manuscript comparing and contrasting two passive acoustic monitoring methodologies - towed array and shelf break HARPs - concerning beaked whale temporal, spatial presence and diving behavior. III. Utilize passive acoustic data from ten shelf-break environments to evaluate composition and dissimilarity of marine mammal community groups at different latitudes.

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  • 879.96 KB
Ocean:Region:Species:Methods:
Complete
Accelerometry Tag Development
Project Objectives
Increase capacity and develop training for marine mammal monitoring in Hawaii utilizing non-invasive triaxial accelerometry biologging tags to quantify fine-scale behavioral and energetic responses of protected species to potential anthropogenic disturbance
View project
Current
Behavioral Response Analysis of Two Populations of Short-Finned Pilot Whales to Mid-Frequency Active Sonar
Project Objectives
Utilize newly developed statistical methods from the Atlantic BRS project and apply them to all the satellite-tagged pilot whales from both the Atlantic and Pacific studies.
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Complete
Blue and Fin Whale Satellite Tagging
Project Objectives
Determine the movement patterns, occurrence, and residence times of blue whales and fin whales within U.S. Navy training and testing areas as well as Biologically Important Areas along the U.S. West Coast
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Complete
Conservation Canine for Marine Mammal Scat Collection in Hawaii
Project Objectives
Test whether a K9 can be trained to detect and 'direct' boat drivers via changes in behavior to the scat of marine mammals in Hawaii
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Complete
Effectiveness of Navy Lookout Teams in Detecting Cetaceans
Project Objectives
Obtain data to characterize the potential exposure of marine mammals and ESA-listed marine species to Navy training and testing activities, evaluate the effectiveness of mitigation measures
View project
Current
Estimation of Received Levels of MFAS and Behavioral Response of Marine Mammals at PMRF
Project Objectives
Further our understanding of the Monitoring Questions: 1) What is the occurrence and estimated received levels of MFAS on 'blackfish', humpback, minke, sperm and Blainville's beaked whales within the PMRF instrumented range? and 2) What, if any, are the short term behavioral responses of 'blackfish,' humpback, minke, sperm and Blainville's beaked whales when exposed to MFAS/explosions at different levels/conditions at PMRF?
View project
Current
Goose-Beaked Whale and Fin Whale Population Dynamics and Impact Assessment at the Southern California Offshore Antisubmarine Warfare Range (SOAR)
Project Objectives
Improve knowledge of baseline population demographics, vital rates, and movement patterns of Cuvier’s beaked whales and fin whales. Examine what, if any, short term behavioral and/or vocal responses occur when exposed to sonar or explosions at different levels and conditions. Determine if exposure to sonar or explosives impact the long term fitness and survival of individuals or the population, species, or stock
View project
Complete
Guadalupe Fur Seal Satellite Tracking
Project Objectives
Determine the at-sea distribution of endangered Guadalupe fur seals and whether they travel through or utilize the offshore waters of the Southern California Range Complex and Northwest Training and Testing area
View project
Complete
Hawaiian Monk Seal Tagging
Project Objectives
Investigate potential impacts of naval activities on Hawaiian monk seals
View project
Current
Long Term Acoustic Monitoring of Marine Mammals Utilizing the Instrumented Range at Pacific Missile Range Facility (PMRF)
Project Objectives
Improve understanding of the long term trends in occurrence of marine mammals (e.g., minke, humpback, fin, Bryde's, Blainville's) on the PMRF range. Examine what, if any, acoustic and physical behavioral responses occur to Navy activities.
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Current
Marine Mammal Monitoring on Navy Ranges (M3R)
Project Objectives
Improve understanding of the long term trends in occurrence of marine mammals on the PMRF and SOAR ranges.
View project
Current
Marine Mammal Sightings During CalCOFI Cruises
Project Objectives
Determine what species and populations of marine mammals are present in Southern California and estimate the abundance and density across seasons
View project
Complete
North Pacific Humpback Whale Tagging
Project Objectives
Determine the occurrence, movement patterns, and residency patterns of multiple humpback whale Distinct Population Segments within Pacific Ocean Navy Range Complexes
View project
Current
North Pacific Marine Mammal Species Distribution
Project Objectives
Develop a North Pacific-wide species distribution model for cetaceans
View project
Current
Pacific Islands Comprehensive Stranding Investigations
Project Objectives
Conduct comprehensive investigations of stranded marine mammals throughout the Pacific Islands with emphasis on the Hawaiian and Mariana Island chains. This includes conducting necropsies of stranded animals, collecting and archiving samples, conducting disease screening, genetic testing, and analysis of historical data. The objective is to examine stranding patterns and causes of death for marine mammals in the Pacific Islands.
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Complete
Pacific Islands Marine Mammal Stranding Diseases
Project Objectives
Determine cause of death when cetaceans strand to ensure accurate public understanding of stranding cause, with focus on infectious diseases
View project
Current
Pacific Marine Assessment Program for Protected Species (PACMAPPS) survey
Project Objectives
Identify species of beaked whales, odontocetes, and baleen whales that occur in the surveyed areas; Monitor marine mammal and sea turtle presence, distribution, and diversity in offshore waters; Develop a better understanding of marine mammal distribution, movement patterns, habitat use, population structure, and abundance; Develop reference library of visually-validated acoustic recordings of marine mammals.
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Complete
Passive Acoustic Monitoring of Marine Mammals Using Autonomous Underwater Vehicles in Southern California
Project Objectives
Explore presence of marine mammals in less-surveyed, offshore areas
View project
Current
Southern California Beaked Whale Occurrence (formerly "Passive Acoustic Monitoring of Marine Mammals in Southern California Range Complex (SOCAL)")
Project Objectives
Determine the distribution and temporal patterns of beaked whale occurrence in the waters within and outside the Southern California Range Complex (SOCAL). Use passive acoustic monitoring to determine what species are present in SOCAL and examine spatial and temporal patterns.
View project
Current
Visual Survey and Tagging of Hawaiian Odontocetes
Project Objectives
(1) define the spatial movement and habitat use patterns of species that are exposed to mid-frequency active (MFA) sonar (2) determine how these patterns influence exposure and potential responses
View project
Kaua‘i field project - August 2026
August 25, 2026
Researchers from Cascadia Research Collective are conducting a 9-day field session off Kaua'i to deploy LIMPET satellite tags on odontocete cetaceans prior to a Submarine Command Course (SCC) to be able to examine their behavior before, during, and after the training event. Click on the image below to see daily updates from the field.
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Kaua'i Field Work Updates
February 20, 2025
Scientists from Cascadia Research Collective recently completed a ~9-day field project off Kaua’i that started on February 9th. This project is timed to occur prior to a Submarine Command Course (SCC) training event. The primary goal is to deploy satellite telemetry tags on multiple species of odontocete cetaceans prior to the SCC, to be able to examine their behavior before, during, and after the event. This approach has been very successful in the past as a way of examining how different species respond to Navy training activities including mid-frequency active sonar (MFAS). Click through the picture below to see daily updates.
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Mesoplodon mysterioso
June 13, 2024
We are thrilled to be part of the "Mystery Mesoplodon Expedition" off the west coast of Baja California searching for an elusive new species of beaked whale. Read about the initial discovery and stay tuned for updates on this exciting expedition!
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Kauai' Field Work Updates
February 16, 2024
Scientists from Cascadia Research Collective are leading a ~9-day field project off Kaua’i that started on February 11th.
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August 2022 Kaua‘i Field Project
August 18, 2022
Cascadia Research Collective began an 8-10 day field project off Kaua’i starting on August 16th. This project is timed to occur prior to a Submarine Command Course (SCC). Their primary goal is to deploy LIMPET satellite tags on one or more species of odontocete cetaceans prior to the SCC, to be able to examine their behavior before, during, and after the SCC. This approach has been very successful in the past as a way of examining how different species respond to Navy training activities including mid-frequency active sonar.
Read post